One Codex

BleomycinShowing all rows

Name	Description	Status	Marker Support
ble	D86934-51206:51610 Marker length: 405 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

MLS (macrolides, lincosamides, streptogramins)Showing all rows

Name	Description	Status	Marker Support
lsa(A)	AY225127-41:1537 Marker length: 1497 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
mdt(A)	X92946-10534:11790 Marker length: 1257 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
lsa(B)	AJ579365-4150:5628 Marker length: 1479 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

AnsamycinsShowing all rows

Name	Description	Status	Marker Support
arr-3	AY038837-555:1007 Marker length: 453 bp	Absent	79.2% coverage 100% identity 1.5x depth

GlycopeptidesExpand

Name	Description	Status	Marker Support
van(C3)	AY033764-26:1078 Marker length: 1053 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
van(Y)	AF516335-5821:6366 Marker length: 546 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
van(D4)	AF277571-1262:2293 Marker length: 1032 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
van(B)	U00456-62:1090 Marker length: 1029 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
van(C1)	AF162694-1411:2442 Marker length: 1032 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

Beta-lactamsExpand

Name	Description	Status	Marker Support
blaTEM-1	AF309824-119:979 Marker length: 861 bp	Present	100% coverage 99.8% identity 7.1x depth
blaLAT-1-LAT-4	X78117-142:1287 Marker length: 1146 bp	Probable	99.4% coverage 97.8% identity 5.8x depth
blaOXA-1	J02967-1359:2189 Marker length: 831 bp	Absent	91.5% coverage 99.9% identity 2.3x depth
blaSHV-1-PIT-2	AF148850-6:866 Marker length: 861 bp	Absent	71.7% coverage 99.1% identity 2.3x depth
blaSHV-5-CAZ-4	AF317502-31:812 Marker length: 782 bp	Probable	96.9% coverage 99.6% identity 2.3x depth

TetracyclinesExpand

Name	Description	Status	Marker Support
tet(X)	M37699-586:1752 Marker length: 1167 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
tet(36)	AJ514254-2534:4456 Marker length: 1923 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
tet(A)	X75761-1059:2258 Marker length: 1200 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
tet(Y)	AF070999-1680:2855 Marker length: 1176 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
tet(B)	V00611-61:1266 Marker length: 1206 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

ThrimetoprimExpand

Name	Description	Status	Marker Support
dfr(D)	Z50141-82:582 Marker length: 501 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
dfrA3b	AY162283-5616:6095 Marker length: 480 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
dfrA6	Z86002-336:809 Marker length: 474 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
dfrA1	AJ628353-2654:3112 Marker length: 459 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
dfrA9	X57730-726:1259 Marker length: 534 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

Quarternary ammonium compoundsShowing all rows

Name	Description	Status	Marker Support
qacED1	AY259086-4692:5039 Marker length: 348 bp	Absent	75.6% coverage 100% identity 2.7x depth

ChloraphenicolExpand

Name	Description	Status	Marker Support
cfr	AJ249217-570:1619 Marker length: 1050 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
cat4	AJ401050-889:1548 Marker length: 660 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
cat	M35190-309:932 Marker length: 624 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
cat(D)	X15100-91:729 Marker length: 639 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
cat(S)	X74948-1:492 Marker length: 492 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

AminoglycosidesExpand

Name	Description	Status	Marker Support
aac(6)Ib	M21682-380:985 Marker length: 606 bp	Absent	66.2% coverage 99.3% identity 0.9x depth
aac(6)-Ib	AY103455-143:721 Marker length: 579 bp	Absent	44.9% coverage 99.4% identity 0.6x depth
ant(2)-Ia	X04555-1149:1829 Marker length: 681 bp	Absent	20.9% coverage 100% identity 0.4x depth
aac(3)Iva	X01385-244:1029 Marker length: 786 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
aad(A1)	AY339625-10986:11777 Marker length: 792 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

StreptograminsExpand

Name	Description	Status	Marker Support
vat(F)-sat	AF170730-70:735 Marker length: 666 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
vgb(B)	AF015628-399:1286 Marker length: 888 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
vat(C)	AF015628-1307:1945 Marker length: 639 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
vga(B)	U82085-629:2287 Marker length: 1659 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
vat(E6)	AY043210-1:645 Marker length: 645 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

LincosamidesExpand

Name	Description	Status	Marker Support
lnu(D)	EF452177-19:513 Marker length: 495 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
lnu(A)-lin(A)	J03947-645:1130 Marker length: 486 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
lnu(G)-lin(G)	DQ836009-1310:2131 Marker length: 822 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
lnu(B)-lin(B)	AJ238249-127:930 Marker length: 804 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
lnu(F)-lin(F)	AJ561197-1321:2142 Marker length: 822 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

MacrolidesExpand

Name	Description	Status	Marker Support
mph(A)	D16251-1626:2531 Marker length: 906 bp	Absent	89.8% coverage 100.0% identity 2.7x depth
mph(K)	U36578-432:1352 Marker length: 921 bp	Absent	87.4% coverage 99.9% identity 2.1x depth
msr(SA)	AB013298-487:1953 Marker length: 1467 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
erm(41)	EU177504-3053:3469 Marker length: 417 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
msrC	AY004350-496:1974 Marker length: 1479 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

Multidrug effluxExpand

Name	Description	Status	Marker Support
cmeB	DQ333454-1831:4950 Marker length: 3120 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
vceA	AF012101-562:1749 Marker length: 1188 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
vceB	AF012101-1759:3294 Marker length: 1536 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
vcmA	AB063193-176:1549 Marker length: 1374 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
cmr	U43535-646:2025 Marker length: 1380 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

SulfonamidesShowing all rows

Name	Description	Status	Marker Support
sulI	X12870-2595:3434 Marker length: 840 bp	Absent	92.7% coverage 100% identity 1.5x depth
sulIII	AJ459418-2979:3770 Marker length: 792 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
sulII	AJ313522-449:1264 Marker length: 816 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

StreptothricinsShowing all rows

Name	Description	Status	Marker Support
sat4	AF516335-15805:16347 Marker length: 543 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

QuinolonesShowing all rows

Name	Description	Status	Marker Support
qnr	AY259086-8075:8731 Marker length: 657 bp	Absent	0.0% coverage 0.0% identity 0.0x depth
norA	D90119-478:1644 Marker length: 1167 bp	Absent	0.0% coverage 0.0% identity 0.0x depth

Please Note: This report, and the information in it, is intended for conduct of research only and is not designed, nor approved, to be used for patient care or diagnostic purposes. Job Version ID: sample-amr.

Panel: AMR Panel — Sample.fa