Analysis — Sample.fa

MIXED
ISOLATE

This is a mixed/metagenomic sample 93.74% of 300,969 reads were classified using the One Codex database.

Composition overview:
High Abundance (0):
    This sample does not contain any dominant species.
Medium Abundance (9):
  • Micrococcus luteus  
  • Pseudomonas aeruginosa  
  • Rhodobacter capsulatus  
  • Escherichia coli  
  • Bacillus amyloliquefaciens  
  • Pseudomonas protegens  
  • Pseudomonas putida  
  • Frankia sp. CcI3  
  • Burkholderia cenocepacia  
Low Abundance (2):
    Bacillus cereus, Streptomyces coelicolor

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Sample Composition

NameEstimated Abundance
Micrococcus luteus17.07%
Pseudomonas aeruginosa13.92%
Rhodobacter capsulatus10.19%
Escherichia coli9.87%
Bacillus amyloliquefaciens9.87%
Pseudomonas protegens8.75%
Pseudomonas putida8.58%
Frankia sp. CcI37.32%
Burkholderia cenocepacia5.16%
Bacillus cereus4.49%
(Remaining)4.79%
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Taxonomic Chart of Classified Reads

2820
Displaying nodes with at least 2820 reads
(<1% of classified reads)
Proteobacteria
Terrabacteria group
superkingdomphylumclassorderfamilygenusspeciesBurkholderia cenocepacia (18,439)Rhodobacter capsulatus (20,641)Pseudomonas aeruginosa (10,323)Pseudomonas protegens (18,074)Enterobacteriaceae (19,431)Dyella japonica (4,322)Micrococcus luteus (19,605)Streptomyces coelicolor (5,547)Frankia (21,980)Bacillus cereus group (3,290)Bacillus amyloliquefaciens (19,071)

Complete Result Table

Organism Name
Rank
Tax ID
% of All Reads
# of Reads
# of Reads (w/ Children)
Est. Depth
Est. Abundance
Micrococcus luteus
Species
1270
0.42
1259
19605
1.947 ⨉
17.07%
Pseudomonas aeruginosa
Species
287
3.41
10278
10323
1.587 ⨉
13.92%
Rhodobacter capsulatus
Species
1061
6.76
20342
20641
1.163 ⨉
10.19%
Escherichia coli
Species
562
0.53
1596
1596
1.125 ⨉
9.87%
 
Bacillus amyloliquefaciens
Species
1390
5.25
15815
19071
1.125 ⨉
9.87%
Pseudomonas protegens
Species
380021
1.77
5314
18074
0.998 ⨉
8.75%
 
Pseudomonas putida
Species
303
0.07
197
2387
0.978 ⨉
8.58%
 
Frankia sp. CcI3
Species
106370
0.07
217
217
0.834 ⨉
7.32%
Burkholderia cenocepacia
Species
95486
6.10
18370
18439
0.588 ⨉
5.16%
Bacillus cereus
Species
1396
0.43
1288
1308
0.512 ⨉
4.49%
 
Streptomyces coelicolor
Species
1902
0.00
0
5547
0.433 ⨉
3.80%
 
Burkholderia sp. K24
Species
1472716
0.62
1875
1875
0.077 ⨉
0.67%
 
Dyella japonica
Species
231455
0.06
189
4322
0.019 ⨉
0.16%
 
Dyella jiangningensis
Species
1379159
0.52
1567
1567
0.006 ⨉
0.06%
 
Showing 310 of 310 entries.

Abundance and depth estimates are provided for all medium- and high-confidence species calls, and are adjusted for genome size.  indicates a high confidence call.

Please Note: This report, and the information in it, is intended for conduct of research only and is not designed, nor approved, to be used for patient care or diagnostic purposes. Job Version ID: sample-classification.
Reads (w/ children) is the sum of all reads that could be classified to this taxon and to any more-specific taxa that fall under this taxonomic tree branch. Learn more here.